diff -pruN 3.22.5+dfsg1-2/debian/changelog 3.22.5+dfsg1-2ubuntu2/debian/changelog --- 3.22.5+dfsg1-2/debian/changelog 2025-04-15 17:07:42.000000000 +0000 +++ 3.22.5+dfsg1-2ubuntu2/debian/changelog 2025-09-07 12:26:42.000000000 +0000 @@ -1,3 +1,19 @@ +petsc (3.22.5+dfsg1-2ubuntu2) questing; urgency=medium + + * No-change rebuild for gfortran 15. + + -- Matthias Klose Sun, 07 Sep 2025 14:26:42 +0200 + +petsc (3.22.5+dfsg1-2ubuntu1) plucky; urgency=low + + * Merge from Debian unstable. Remaining changes: + - debian/rules: pass -Wl,-z,defs to the linker to guard against future + misbuilds. + - debian/patches/gcc-13.patch: fix misdetection of required C++ + library with gcc-13. + + -- Gianfranco Costamagna Wed, 16 Apr 2025 11:48:33 +0200 + petsc (3.22.5+dfsg1-2) unstable; urgency=medium * dev packages: complement Depends: mpi-default-dev with @@ -9,6 +25,16 @@ petsc (3.22.5+dfsg1-2) unstable; urgency -- Drew Parsons Tue, 15 Apr 2025 19:07:42 +0200 +petsc (3.22.5+dfsg1-1ubuntu1) plucky; urgency=low + + * Merge from Debian unstable. Remaining changes: + - debian/rules: pass -Wl,-z,defs to the linker to guard against future + misbuilds. + - debian/patches/gcc-13.patch: fix misdetection of required C++ + library with gcc-13. + + -- Gianfranco Costamagna Tue, 01 Apr 2025 08:02:11 +0200 + petsc (3.22.5+dfsg1-1) unstable; urgency=medium * New upstream release @@ -18,6 +44,16 @@ petsc (3.22.5+dfsg1-1) unstable; urgency -- Drew Parsons Mon, 31 Mar 2025 13:03:44 +0200 +petsc (3.22.4+dfsg1-2ubuntu1) plucky; urgency=medium + + * Merge from Debian unstable. Remaining changes: + - debian/rules: pass -Wl,-z,defs to the linker to guard against future + misbuilds. + - debian/patches/gcc-13.patch: fix misdetection of required C++ + library with gcc-13. + + -- Gianfranco Costamagna Fri, 14 Mar 2025 18:04:24 +0100 + petsc (3.22.4+dfsg1-2) unstable; urgency=medium * debian/tests: set OMPI_MCA_btl_tcp_if_include=lo to avoid openmpi @@ -26,24 +62,82 @@ petsc (3.22.4+dfsg1-2) unstable; urgency -- Drew Parsons Fri, 14 Mar 2025 11:25:18 +0100 +petsc (3.22.4+dfsg1-1ubuntu1) plucky; urgency=low + + * Merge from Debian unstable. Remaining changes: + - debian/rules: pass -Wl,-z,defs to the linker to guard against future + misbuilds. + - debian/patches/gcc-13.patch: fix misdetection of required C++ + library with gcc-13. + + -- Gianfranco Costamagna Wed, 12 Mar 2025 08:32:08 +0100 + petsc (3.22.4+dfsg1-1) unstable; urgency=medium * New upstream release -- Drew Parsons Tue, 11 Mar 2025 15:25:50 +0100 +petsc (3.22.3+dfsg1-1ubuntu1) plucky; urgency=low + + * Merge from Debian unstable. Remaining changes: + - debian/rules: pass -Wl,-z,defs to the linker to guard against future + misbuilds. + - debian/patches/gcc-13.patch: fix misdetection of required C++ + library with gcc-13. + + -- Gianfranco Costamagna Mon, 03 Mar 2025 10:22:17 +0100 + petsc (3.22.3+dfsg1-1) unstable; urgency=medium * New upstream release -- Drew Parsons Tue, 18 Feb 2025 15:00:59 +0100 +petsc (3.22.2+dfsg1-1ubuntu2) plucky; urgency=medium + + * No-change rebuild against libhdf5-310 + + -- Miriam España Acebal Sun, 26 Jan 2025 11:05:24 +0000 + +petsc (3.22.2+dfsg1-1ubuntu1) plucky; urgency=medium + + * Merge from Debian unstable. Remaining changes: + - debian/rules: pass -Wl,-z,defs to the linker to guard against future + misbuilds. + - debian/patches/gcc-13.patch: fix misdetection of required C++ + library with gcc-13. + + -- Sudip Mukherjee Mon, 16 Dec 2024 22:20:21 +0000 + petsc (3.22.2+dfsg1-1) unstable; urgency=medium * New upstream release -- Drew Parsons Sun, 08 Dec 2024 19:23:27 +0100 +petsc (3.22.1+dfsg1-2ubuntu3) plucky; urgency=medium + + * No-change rebuild for mpich_4.2.1-2. + + -- Sudip Mukherjee Wed, 11 Dec 2024 22:01:14 +0000 + +petsc (3.22.1+dfsg1-2ubuntu2) plucky; urgency=medium + + * No-change rebuild for libopenmpi40 + + -- Sudip Mukherjee Thu, 05 Dec 2024 12:02:32 +0000 + +petsc (3.22.1+dfsg1-2ubuntu1) plucky; urgency=low + + * Merge from Debian unstable. Remaining changes: + - debian/rules: pass -Wl,-z,defs to the linker to guard against future + misbuilds. + - debian/patches/gcc-13.patch: fix misdetection of required C++ + library with gcc-13. + + -- Gianfranco Costamagna Sat, 30 Nov 2024 10:55:21 +0100 + petsc (3.22.1+dfsg1-2) unstable; urgency=medium * upload petsc 3.22 to unstable. Transition #1082552. @@ -80,6 +174,22 @@ petsc (3.21.6+dfsg1-3) unstable; urgency -- Francesco Ballarin Wed, 20 Nov 2024 06:42:09 +0000 +petsc (3.21.6+dfsg1-2ubuntu2) plucky; urgency=medium + + * No-change rebuild for libsuperlu7 + + -- Sudip Mukherjee Mon, 04 Nov 2024 15:17:00 +0000 + +petsc (3.21.6+dfsg1-2ubuntu1) plucky; urgency=low + + * Merge from Debian unstable. Remaining changes: + - debian/rules: pass -Wl,-z,defs to the linker to guard against future + misbuilds. + - debian/patches/gcc-13.patch: fix misdetection of required C++ + library with gcc-13. + + -- Gianfranco Costamagna Fri, 01 Nov 2024 15:40:36 +0100 + petsc (3.21.6+dfsg1-2) unstable; urgency=medium * Add Francesco Ballarin to uploaders @@ -125,6 +235,22 @@ petsc (3.21.4+dfsg1-1exp1) experimental; -- Drew Parsons Sat, 24 Aug 2024 18:22:02 +0200 +petsc (3.20.6+dfsg1-3ubuntu3) oracular; urgency=medium + + * No-change rebuild against mpi-defaults 1.17 + + -- Graham Inggs Sat, 21 Sep 2024 14:51:30 +0000 + +petsc (3.20.6+dfsg1-3ubuntu2) oracular; urgency=medium + + * Merge with Debian; remaining changes: + - debian/rules: pass -Wl,-z,defs to the linker to guard against future + misbuilds. + - debian/patches/gcc-13.patch: fix misdetection of required C++ + library with gcc-13. + + -- Matthias Klose Fri, 23 Aug 2024 14:34:09 +0200 + petsc (3.20.6+dfsg1-3) unstable; urgency=medium * build 64-bit petsc against scotch-int64 not scotch-long @@ -151,6 +277,16 @@ petsc (3.20.6+dfsg1-2) unstable; urgency -- Drew Parsons Wed, 21 Aug 2024 20:09:11 +0200 +petsc (3.20.6+dfsg1-1ubuntu1) oracular; urgency=medium + + * Merge from Debian unstable. Remaining changes: + - debian/patches/gcc-13.patch: fix misdetection of required C++ + library with gcc-13. + - debian/rules: pass -Wl,-z,defs to the linker to guard against future + misbuilds. + + -- Gianfranco Costamagna Sat, 18 May 2024 10:01:06 +0200 + petsc (3.20.6+dfsg1-1) unstable; urgency=medium * New upstream release. @@ -183,6 +319,28 @@ petsc (3.20.3+dfsg1-1exp1) experimental; -- Drew Parsons Tue, 12 Mar 2024 19:57:49 +0100 +petsc (3.19.6+dfsg1-2.2ubuntu3) oracular; urgency=medium + + * Rebuild against new libhypre-2.29.0. + + -- Gianfranco Costamagna Sat, 18 May 2024 08:34:10 +0200 + +petsc (3.19.6+dfsg1-2.2ubuntu2) noble; urgency=medium + + * No-change rebuild for CVE-2024-3094 + + -- Steve Langasek Sun, 31 Mar 2024 06:45:22 +0000 + +petsc (3.19.6+dfsg1-2.2ubuntu1) noble; urgency=low + + * Merge from Debian unstable. Remaining changes: + - debian/patches/gcc-13.patch: fix misdetection of required C++ + library with gcc-13. + - debian/rules: pass -Wl,-z,defs to the linker to guard against future + misbuilds. + + -- Gianfranco Costamagna Mon, 04 Mar 2024 09:20:10 +0100 + petsc (3.19.6+dfsg1-2.2) unstable; urgency=medium * Non-maintainer upload. @@ -191,6 +349,16 @@ petsc (3.19.6+dfsg1-2.2) unstable; urgen -- Steve Langasek Sun, 03 Mar 2024 21:40:10 +0000 +petsc (3.19.6+dfsg1-2.1ubuntu1) noble; urgency=low + + * Merge from Debian unstable. Remaining changes: + - debian/patches/gcc-13.patch: fix misdetection of required C++ + library with gcc-13. + - debian/rules: pass -Wl,-z,defs to the linker to guard against future + misbuilds. + + -- Gianfranco Costamagna Fri, 01 Mar 2024 12:16:48 +0100 + petsc (3.19.6+dfsg1-2.1) unstable; urgency=medium * Non-maintainer upload. @@ -198,6 +366,16 @@ petsc (3.19.6+dfsg1-2.1) unstable; urgen -- Benjamin Drung Thu, 29 Feb 2024 20:22:10 +0000 +petsc (3.19.6+dfsg1-2ubuntu1) noble; urgency=medium + + * Merge from Debian unstable. Remaining changes: + - debian/patches/gcc-13.patch: fix misdetection of required C++ + library with gcc-13. + - debian/rules: pass -Wl,-z,defs to the linker to guard against future + misbuilds. + + -- Gianfranco Costamagna Mon, 22 Jan 2024 08:53:48 +0100 + petsc (3.19.6+dfsg1-2) unstable; urgency=medium * Update debian/patches/soname_extension to also add a define PETSC_LIB_EXT, @@ -206,6 +384,16 @@ petsc (3.19.6+dfsg1-2) unstable; urgency -- Francesco Ballarin Sun, 21 Jan 2024 06:41:21 +0000 +petsc (3.19.6+dfsg1-1ubuntu1) noble; urgency=low + + * Merge from Debian unstable. Remaining changes: + - debian/patches/gcc-13.patch: fix misdetection of required C++ + library with gcc-13. + - debian/rules: pass -Wl,-z,defs to the linker to guard against future + misbuilds. + + -- Gianfranco Costamagna Sun, 24 Dec 2023 09:35:58 +0100 + petsc (3.19.6+dfsg1-1) unstable; urgency=medium * New upstream release. @@ -233,6 +421,33 @@ petsc (3.19.2+dfsg1-1exp1) experimental; -- Drew Parsons Tue, 20 Jun 2023 16:17:08 +0200 +petsc (3.18.6+dfsg1-1ubuntu3) noble; urgency=medium + + * Rebuild against new libcholmod5. + + -- Gianfranco Costamagna Thu, 23 Nov 2023 17:47:49 +0100 + +petsc (3.18.6+dfsg1-1ubuntu2) noble; urgency=medium + + * Rebuild against new libspqr4. + + -- Gianfranco Costamagna Fri, 27 Oct 2023 10:49:22 +0200 + +petsc (3.18.6+dfsg1-1ubuntu1) mantic; urgency=medium + + * debian/patches/gcc-13.patch: fix misdetection of required C++ + library with gcc-13. + * debian/rules: pass -Wl,-z,defs to the linker to guard against future + misbuilds. + + -- Steve Langasek Wed, 16 Aug 2023 08:42:11 -0700 + +petsc (3.18.6+dfsg1-1build1) mantic; urgency=medium + + * No-change rebuild against libamd3 + + -- Steve Langasek Sun, 30 Jul 2023 20:56:16 +0000 + petsc (3.18.6+dfsg1-1) unstable; urgency=medium * New upstream release. diff -pruN 3.22.5+dfsg1-2/debian/control 3.22.5+dfsg1-2ubuntu2/debian/control --- 3.22.5+dfsg1-2/debian/control 2025-04-15 17:07:42.000000000 +0000 +++ 3.22.5+dfsg1-2ubuntu2/debian/control 2025-04-15 22:28:05.000000000 +0000 @@ -1,7 +1,8 @@ Source: petsc Section: devel Priority: optional -Maintainer: Debian Science Maintainers +Maintainer: Ubuntu Developers +XSBC-Original-Maintainer: Debian Science Maintainers Uploaders: "Adam C. Powell, IV" , Drew Parsons , diff -pruN 3.22.5+dfsg1-2/debian/patches/gcc-13.patch 3.22.5+dfsg1-2ubuntu2/debian/patches/gcc-13.patch --- 3.22.5+dfsg1-2/debian/patches/gcc-13.patch 1970-01-01 00:00:00.000000000 +0000 +++ 3.22.5+dfsg1-2ubuntu2/debian/patches/gcc-13.patch 2024-12-16 22:18:25.000000000 +0000 @@ -0,0 +1,27 @@ +Description: fix misdetection of required C++ library with gcc-13 + petsc tries to autodetect what libraries need to be passed to the C + compiler in order to correctly link C++ code. Unfortunately, the test + case somehow manages to build just fine without an explicit -lstdc++ + argument under gcc-13, causing missing linkage. Hard code the library + option instead. +Author: Steve Langasek +Forwarded: no +Last-Update: 2023-08-15 + +Index: petsc-3.19.6+dfsg1-1ubuntu1/config/BuildSystem/config/compilers.py +=================================================================== +--- petsc-3.19.6+dfsg1-1ubuntu1.orig/config/BuildSystem/config/compilers.py ++++ petsc-3.19.6+dfsg1-1ubuntu1/config/BuildSystem/config/compilers.py +@@ -458,6 +458,12 @@ + '''Determines the libraries needed to link using the C or Fortran compiler C++ source code compiled with C++. Result is stored in cxxlibs''' + skipcxxlibraries = 1 + self.setCompilers.saveLog() ++ oldLibs = self.setCompilers.LIBS ++ self.setCompilers.LIBS = '-lstdc++ '+self.setCompilers.LIBS ++ self.logWrite(self.setCompilers.restoreLog()) ++ self.logPrint('C++ requires -lstdc++ to link with C compiler', 3, 'compilers') ++ return ++ + body = '''#include \n#include \nvoid asub(void)\n{std::vector v;\ntry { throw 20; } catch (int e) { std::cout << "An exception occurred"; }}''' + oldLibs = '' + try: diff -pruN 3.22.5+dfsg1-2/debian/patches/series 3.22.5+dfsg1-2ubuntu2/debian/patches/series --- 3.22.5+dfsg1-2/debian/patches/series 2025-04-15 17:07:42.000000000 +0000 +++ 3.22.5+dfsg1-2ubuntu2/debian/patches/series 2025-04-15 22:28:05.000000000 +0000 @@ -12,3 +12,4 @@ label_tests.patch downloaded_SAWs.js.patch configure_python3.patch petscmatmod_split.patch +gcc-13.patch diff -pruN 3.22.5+dfsg1-2/debian/rules 3.22.5+dfsg1-2ubuntu2/debian/rules --- 3.22.5+dfsg1-2/debian/rules 2025-04-15 17:07:42.000000000 +0000 +++ 3.22.5+dfsg1-2ubuntu2/debian/rules 2025-04-15 22:28:05.000000000 +0000 @@ -165,7 +165,9 @@ CONFIGURATION_OPTIONS=--with-shared-libr --with-fftw=1 --with-fftw-include=[] --with-fftw-lib="-lfftw3 -lfftw3_mpi" \ --with-yaml=1 \ $(VALGRIND_CONFIG) \ - $(PETSC_HDF5_FLAGS) --CXX_LINKER_FLAGS="-Wl,--no-as-needed" + $(PETSC_HDF5_FLAGS) \ + --CXX_LINKER_FLAGS="-Wl,--no-as-needed -Wl,-z,defs" \ + --CC_LINKER_FLAGS="-Wl,-z,defs" # hypre is only supported with real numbers, not complex